;
;	File 'topol.top' was generated
;	By user: n1805727 (24223)
;	On host: ntu01
;	At date: Wed Jul 17 16:56:33 2019

;
;	This is a standalone topology file
;
;	Created by:
;	                 :-) GROMACS - gmx pdb2gmx, VERSION 5.1.4 (-:
;	
;	Executable:   /app/gromacs/5.1.4/gcc493/impi/bin/gmx
;	Data prefix:  /app/gromacs/5.1.4/gcc493/impi
;	Command line:
;	  gmx pdb2gmx -f Protein.pdb -ignh
;	Force field was read from the standard GROMACS share directory.
;

; Include forcefield parameters
#include "amber99sb-ildn.ff/forcefield.itp"

; Include chain topologies
#include "Protein.itp"
#include "Protein2.itp"
#include "BEC.itp"

; Include water topology
#include "amber99sb-ildn.ff/tip3p.itp"

#ifdef POSRES_WATER
; Position restraint for each water oxygen
[ position_restraints ]
;  i funct       fcx        fcy        fcz
   1    1       1000       1000       1000
#endif

; Include topology for ions
#include "amber99sb-ildn.ff/ions.itp"

[ system ]
; Name
Protein in water t= 7500.00000

[ molecules ]
; Compound        #mols
Protein             1
Protein2            1
BEC                 1
